IGVFFI8900PWSX

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2850BWAN(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP010_G3_P057_L001_R1

md5sum

399cbc67abcee59a9d462aebe33c9ae7

Content MD5sum

eca18583dfaaba8fec36855078a99c74

File Size

1.4 GB

Submitted File Name

Multiome_ATAC_RP010_G3_L003_P057_S19_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

45513896

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7086NABQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples