IGVFFI8883UDHM

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI8883UDHM/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI8883UDHM",
10    "aliases": [
11        "jesse-engreitz:PPIF_promoter_lentiMPRA_CRS-BC_Assignment_Sequencing"
12    ],
13    "assay_titles": [],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG011972/",
17        "component": "functional characterization"
18    },
19    "content_md5sum": "9e8188294740904f0adb08ff576e8920",
20    "content_type": "reads",
21    "controlled_access": false,
22    "creation_timestamp": "2024-11-23T00:44:33.281818+00:00",
23    "externally_hosted": false,
24    "file_format": "fastq",
25    "file_set": {
26        "@id": "/construct-library-sets/IGVFDS3011TBLW/",
27        "@type": [
28            "ConstructLibrarySet",
29            "FileSet",
30            "Item"
31        ],
32        "accession": "IGVFDS3011TBLW",
33        "file_set_type": "reporter library",
34        "status": "preview",
35        "summary": "reporter library targeting sequence variants in a genomic locus"
36    },
37    "file_size": 10081047189,
38    "gene_list_for": [],
39    "href": "/sequence-files/IGVFFI8883UDHM/@@download/IGVFFI8883UDHM.fastq.gz",
40    "input_file_for": [
41        "/tabular-files/IGVFFI1529QZRS/"
42    ],
43    "integrated_in": [],
44    "lab": {
45        "@id": "/labs/jesse-engreitz/",
46        "title": "Jesse Engreitz, Stanford"
47    },
48    "loci_list_for": [],
49    "maximum_read_length": 226452,
50    "md5sum": "ae5a19143d5105723a51404efae29427",
51    "mean_read_length": 446.1,
52    "minimum_read_length": 1,
53    "quality_metrics": [],
54    "read_count": 12519295,
55    "s3_uri": "s3://igvf-files/2024/11/23/61a7ad2a-bb0e-4db9-b7af-89dee33a1532/IGVFFI8883UDHM.fastq.gz",
56    "schema_version": "15",
57    "seqspecs": [],
58    "sequencing_kit": "ONT Ligation Sequencing Kit V14",
59    "sequencing_platform": {
60        "@id": "/platform-terms/EFO_0008634/",
61        "status": "released",
62        "term_name": "ONT PromethION"
63    },
64    "sequencing_run": 1,
65    "status": "preview",
66    "submitted_by": {
67        "@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
68        "title": "Michael Montgomery"
69    },
70    "submitted_file_name": "MONTGOMERY_508_3.fastq.gz",
71    "summary": "reads from sequencing run 1",
72    "upload_status": "validated",
73    "uuid": "61a7ad2a-bb0e-4db9-b7af-89dee33a1532"
74}