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IGVFFI8873ROJR

released
validated
File Set
IGVFDS3954OIWN(single-cell ATAC-seq (SHARE-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
buenrostro-bernstein:surya-DSS21BC-more-ATAC.R1.fastq.gz
md5sum
32706336cb50b0709730620427c48ecf
Content MD5sum
cad0e63a30db83d4e9af42850a1650ba
File Size
7.8 GB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/submit-fqs/DSS21BC-more-ATAC.R1.fastq.gz
Checkfiles Version
v14
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
49.18
Read Count
244002643

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Jason Buenrostro, Broad
2.3 GB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8873ROJR, IGVFFI5527SVWF, IGVFFI3855LXKJ
Jason Buenrostro, Broad
1.2 KB
validated