IGVFFI8855AMJE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3353QGFY(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X044_G6_P045_L001_R2

md5sum

e784f08b02e73dd5aa3ba7e8571614d3

Content MD5sum

f87d9608e6061b5f1dc4943ae315cd57

File Size

3.7 GB

Submitted File Name

Multiome_ATAC_X044_G6_L006_P045_S2_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

211706831

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3425YHKS

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples