IGVFFI8825PYZU

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    "aliases": [
        "jesse-engreitz:auxiliary_files_CRUDO_TAPseq-Auxin0hrs-Rep2_S3_R1"
    ],
    "assay_titles": [
        "TAP-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "content_md5sum": "f6549170cd3008b1934035ea92502aad",
    "content_type": "reads",
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    "creation_timestamp": "2024-06-03T19:16:41.905069+00:00",
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    "file_set": {
        "@id": "/auxiliary-sets/IGVFDS8748OHPQ/",
        "accession": "IGVFDS8748OHPQ",
        "file_set_type": "gRNA sequencing",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM0767GJUV/",
                "accession": "IGVFSM0767GJUV",
                "classifications": [
                    "cell line"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0002824/",
                        "term_name": "HCT116"
                    }
                ],
                "summary": "HCT116 cell line, male, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
                "taxa": "Homo sapiens"
            }
        ],
        "summary": "gRNA sequencing for interference TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci"
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    "href": "/sequence-files/IGVFFI8825PYZU/@@download/IGVFFI8825PYZU.fastq.gz",
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    "integrated_in": [],
    "lab": {
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        "title": "Jesse Engreitz, Stanford"
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    "lane": 3,
    "loci_list_for": [],
    "maximum_read_length": 28,
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    "release_timestamp": "2024-07-10T20:26:41.553839+00:00",
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    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0008566/",
        "term_name": "Illumina NextSeq 550"
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    "sequencing_run": 1,
    "status": "released",
    "submitted_by": {
        "@id": "/users/100f06c6-83a7-4b4d-9dfd-053a1829773b/",
        "title": "Benjamin Doughty"
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    "submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L379_S2_L003_R1_001.fastq.gz",
    "summary": "R1 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "91ec797c-0db8-4c9f-994e-855454e464a8"
}