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IGVFFI8821SFDV

released
validated
File Set
IGVFDS6675BDQA(scATAC-seq)
Summary
I1 reads from sequencing run 2
File Format
fastq
Content Type
reads
Aliases
jay-shendure:scATAC_mEBs_rep1_day21_10XlaneB_reseq_I1
md5sum
53a6e80c1f65cef843fef90dce0cd76f
Content MD5sum
6e893ed38a8a392be6b409a618b0989c
File Size
791 MB
Submitted File Name
/net/shendure/vol8/projects/JBL/GEO_scATAC_EB_correction_nobackup/scATAC_mEBs/scATAC_mEBs_d21_crispri_rep1_lane_b_reseq_I1_001.fastq.gz

Sequencing Details

Sequencing Platform
Illumina NextSeq 500
Sequencing Run
2
Flowcell ID
H3HFJBGXG
Lane
1
Sequencing Kit
NextSeq 500/550 High-Output v2.5 Kit
Illumina Read Type
I1
Average Read Length
8
Read Count
104155221

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB), male, Mus musculus WD44

Files Derived From This File

7 items
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
87 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
202 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
53 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
71 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
126 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
120 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
77 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8821SFDV, IGVFFI4136YACE, IGVFFI0014UJDI, IGVFFI2437FQNY
Jay Shendure, UW
851 B
validated

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW