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IGVFFI8787VPRW

released
validated
File Set
IGVFDS6334KAGT(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
buenrostro-bernstein:surya-DSS04-prim-RNA.R1.fastq.gz
md5sum
342f80fc9dbe5de3ede6bcba417dba83
Content MD5sum
051a844d5384835440145cca506593e3
File Size
776 MB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/submit-fqs/DSS04-prim-RNA.R1.fastq.gz
Checkfiles Version
v14
Submitter Comment
DSS04-prim-5k_P1.51
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
25190008

Samples

1 item
Accession
Type
Sample Terms
Summary
PrimaryCell
Mus musculus C57BL/6J colon cell

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
111 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8787VPRW, IGVFFI0166WQMQ, IGVFFI3952BRGU
Jason Buenrostro, Broad
1.2 KB
validated