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IGVFFI8770YVGL

released
validated
File Set
IGVFDS4464LQXA(single-cell RNA sequencing assay (SHARE-seq))
Summary
R2 reads from sequencing run 173
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_173_R2
bradley-bernstein:SS-LS_2120_R2
buenrostro-bernstein:SS-LS_173_R2
buenrostro-bernstein:SS-LS_2120_R2
md5sum
a68d97278aff334ca1e00e2b0a9240b8
Content MD5sum
bd9f71b390751af6d6267d53f052f53c
File Size
993 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-202_L2_SS-PKR-131_2022-APRIL-R1-PLATE2-ENTIRE-PLATE_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
173
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
20616294

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)

Files Derived From This File

2 items
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
2.2 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
924 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI0446XXIA, IGVFFI8770YVGL
Jason Buenrostro, Broad
1.2 KB
validated