IGVFFI8766BKAK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0111NTYK(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X035_G1_P035_L003_I1

md5sum

1521d83b79937837db64fefced8aba5d

Content MD5sum

2a59adc0556050fb5e8f2f9db4d4cbae

File Size

1.5 GB

Submitted File Name

Multiome_ATAC_X035_G1_L001_P035_S33_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

200083449

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7804QSQN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) substantia nigra tissue; Homo sapiens (female, 84 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples