IGVFFI8765SDIP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9441JIJG(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP027_G4_P075_L004_R1

md5sum

e326133e0981910b8e94f834f8b720ed

Content MD5sum

89f5ae77d35fc12bf00384a3867721c3

File Size

13 GB

Submitted File Name

Multiome_ATAC_RP027_G4_L004_P075_S28_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

182733420

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5603MWWM

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 6 more samples