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IGVFFI8764YHFM

released
validated
File Set
IGVFDS7037REPR(CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus)
Summary
R1 reads from sequencing run 4
File Format
fastq
Content Type
reads
Aliases
charles-gersbach:measurement-set-crispra-region3-mouse-hl1-targeted-hicar-rep1-R1
md5sum
ca426098808ab899f65a1f8e5f5fa244
Content MD5sum
bcc45efac2a3bbed3126d356e9a9d092
File Size
1.1 GB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/fastq/crispra_mouse/crispra_hicar_mouse_fastq/HL_1_TA446_1_noET1_ds.62ae2232c0cc4744bd32ce6a0473f891/HL_1_TA446_1_noET1_S14_L001_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
4
Sequencing Kit
NextSeq 1000/2000 P2 Reagent Kit
Illumina Read Type
R1
Average Read Length
100
Read Count
21604163

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
mcool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
51 MB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke