IGVFFI8751ZXGI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2819XOSD(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X026_G3_P026_L002_R1

md5sum

5df287abf9481f028ad68e78555e5b98

Content MD5sum

cf45b787f09ac65b1d982fd76013e4c9

File Size

4.9 GB

Submitted File Name

Multiome_RNA_X026_G3_L003_P026_S4_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

235023801

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0949TONL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples