Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
SequenceFile
/
IGVFFI8749TDVO
IGVFFI8749TDVO
released
validated
Json view
File Set
IGVFDS6762CWMX
(reporter library targeting random selections genome-wide)
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
tim-reddy:starr-seq-dna-fastq-k562-P020-R2
md5sum
c4e5f8f2160a981b4f33ff732574fb46
Content MD5sum
291f37a83a3f7f00ed0cdbd8c670dfee
File Size
8.9 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/raw_data/AIM_1_STARR_seq/K562.starrseq.dna.pool20.R2.fastq.gz
Checkfiles Version
v17
Attribution
Tim Reddy, Duke
(
HG012053
—
Charles Gersbach
)
Sequencing Details
Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
1
Flowcell ID
AACNYKVM5
Lane
1
Sequencing Kit
NextSeq 2000 P3 XLEAP-SBS Reagent Kit
Illumina Read Type
R2
Average Read Length
301
Read Count
56198406
Files Derived From This File
2 items
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI0153UJPQ
bam
alignments
GRCh38 unfiltered alignments
Tim Reddy, Duke
7.7 GB
validated
IGVFFI3279POMC
bam
alignments
custom assembly unfiltered alignments
Tim Reddy, Duke
8.1 GB
validated