IGVFFI8726ELZJ

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI8726ELZJ/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI8726ELZJ",
10    "aliases": [
11        "ansuman-satpathy:igvf_exp9_multi_10x3_NGS1_r1"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "content_md5sum": "95c26e0c55b4f8ef52d74fa302802e5a",
22    "content_type": "reads",
23    "controlled_access": true,
24    "creation_timestamp": "2024-07-23T21:43:35.467200+00:00",
25    "externally_hosted": false,
26    "file_format": "fastq",
27    "file_set": {
28        "@id": "/auxiliary-sets/IGVFDS4415ANKP/",
29        "@type": [
30            "AuxiliarySet",
31            "FileSet",
32            "Item"
33        ],
34        "accession": "IGVFDS4415ANKP",
35        "file_set_type": "lipid-conjugated oligo sequencing",
36        "samples": [
37            {
38                "@id": "/multiplexed-samples/IGVFSM2794HHHZ/",
39                "@type": [
40                    "MultiplexedSample",
41                    "Sample",
42                    "Item"
43                ],
44                "accession": "IGVFSM2794HHHZ",
45                "classifications": [
46                    "differentiated cell specimen",
47                    "multiplexed sample"
48                ],
49                "disease_terms": [],
50                "modifications": [],
51                "sample_terms": [
52                    {
53                        "@id": "/sample-terms/CL_0000236/",
54                        "status": "released",
55                        "term_name": "B cell"
56                    }
57                ],
58                "status": "released",
59                "summary": "multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples",
60                "taxa": "Homo sapiens",
61                "treatments": []
62            }
63        ],
64        "status": "released",
65        "summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
66    },
67    "file_size": 488137562,
68    "flowcell_id": "223JHYLT3",
69    "gene_list_for": [],
70    "href": "/sequence-files/IGVFFI8726ELZJ/@@download/IGVFFI8726ELZJ.fastq.gz",
71    "illumina_read_type": "R1",
72    "input_file_for": [
73        "/tabular-files/IGVFFI1424EJJW/"
74    ],
75    "integrated_in": [],
76    "lab": {
77        "@id": "/labs/ansuman-satpathy/",
78        "title": "Ansuman Satpathy, Stanford"
79    },
80    "lane": 1,
81    "loci_list_for": [],
82    "maximum_read_length": 28,
83    "md5sum": "4fd0e1b5067e5b23023f7ee6c7109466",
84    "mean_read_length": 28,
85    "minimum_read_length": 28,
86    "quality_metrics": [],
87    "read_count": 23851474,
88    "release_timestamp": "2025-03-22T00:38:10.775199+00:00",
89    "s3_uri": "s3://igvf-restricted-files/2024/07/23/a43340b5-c553-4c23-a6af-1b92a10a7166/IGVFFI8726ELZJ.fastq.gz",
90    "schema_version": "15",
91    "seqspecs": [
92        "/configuration-files/IGVFFI9306BOXQ/"
93    ],
94    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
95    "sequencing_platform": {
96        "@id": "/platform-terms/EFO_0022840/",
97        "status": "released",
98        "term_name": "Illumina NovaSeq X"
99    },
100    "sequencing_run": 1,
101    "status": "released",
102    "submitted_by": {
103        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
104        "title": "Christopher Mcginnis"
105    },
106    "submitted_file_name": "/oak/stanford/projects/igvf/Projects/230707_IGVF9_McGinnis/MULTI/FASTQ/MULTI_3_CMAS_IGVF9_R_S4_L001_R1_001.fastq.gz",
107    "summary": "R1 reads from sequencing run 1",
108    "upload_status": "validated",
109    "uuid": "a43340b5-c553-4c23-a6af-1b92a10a7166"
110}