IGVFFI8713IBAC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4785ZNDK(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X030_G4_P029_L003_R1

md5sum

7a49fa5652e8d539b4eb5f65f2dec681

Content MD5sum

275524b36985b142d024be7e4b60c70e

File Size

8.3 GB

Submitted File Name

Multiome_ATAC_X030_G4_L004_P029_S32_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

155916877

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8429YTMF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 60 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples