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IGVFFI8711PJIQ

released
validated
File Set
IGVFDS2200ZALZ(lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp1_multi_10x2_NGS1_r1
md5sum
4a798cd3bb82895d51014c58ce28f60c
Content MD5sum
5ec611cffc21ae571f509b0efae91f2b
File Size
486 MB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF1_McGinnis/MULTI/FASTQ/MULTI_2_S45_L007_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
2257H3LT3
Lane
7
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
23978847

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) HAP-1 cell line; Homo sapiens (male) HAP-1 cell line; ... and 13 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
445 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8711PJIQ, IGVFFI7041QHWA, IGVFFI8424ARGP, IGVFFI4624DTJY
Ansuman Satpathy, Stanford
1.3 KB
validated