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IGVFFI8702MWTF

released
validated
File Set
IGVFDS9860EXKL(lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp2_multi_10x1_NGS2_i1
md5sum
127f376b44dc453fba53da6a8982e95c
Content MD5sum
b086fb7eb481de0bad7bed7bb06a17a4
File Size
239 MB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF2_McGinnis/MULTI/FASTQ/MULTI_3_S46_L008_I1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
2257H3LT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
10
Read Count
32140709

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) TeloHAEC cell line treated with 10 ng/mL tumor necrosis factor alpha for 4 hours; Homo sapiens (female) TeloHAEC cell line; ... and 7 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
605 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9650KYBD, IGVFFI8387TIGP, IGVFFI0210PZLR, IGVFFI8702MWTF
Ansuman Satpathy, Stanford
1.3 KB
validated