IGVFFI8672HWBS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3216QPMN(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X026_G8_P025_L001_R3

md5sum

5970ecafdb02bf6bcfbd65958c09c6df

Content MD5sum

858550238a08358d2c448ac98224a16e

File Size

3.2 GB

Submitted File Name

Multiome_ATAC_X026_G8_L008_P025_S9_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

100211292

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4683YJRI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples