{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI8640VURN/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI8640VURN",
"aliases": [
"chongyuan-luo:pgp_snmct_C39_day9_L4_R2"
],
"assay_titles": [
"snMCT-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012079/",
"component": "networks"
},
"content_md5sum": "81a113f69ef152be86c87b6b981d012c",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-18T03:56:00.479137+00:00",
"externally_hosted": false,
"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS2095EPAX/",
"accession": "IGVFDS2095EPAX",
"file_set_type": "experimental data",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM3665LIKW/",
"accession": "IGVFSM3665LIKW",
"classifications": [
"reprogrammed cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000057/",
"status": "released",
"term_name": "fibroblast"
}
],
"status": "released",
"summary": "fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 9 days, Homo sapiens",
"targeted_sample_term": {
"@id": "/sample-terms/EFO_0004905/",
"status": "released",
"term_name": "induced pluripotent stem cell"
},
"taxa": "Homo sapiens"
}
],
"status": "released",
"summary": "snMCT-seq"
},
"file_size": 6117440492,
"gene_list_for": [],
"href": "/sequence-files/IGVFFI8640VURN/@@download/IGVFFI8640VURN.fastq.gz",
"illumina_read_type": "R2",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/chongyuan-luo/",
"title": "Chongyuan Luo, UCLA"
},
"lane": 4,
"loci_list_for": [],
"maximum_read_length": 151,
"md5sum": "e8364c274873bb99b60a8748909c3cbd",
"mean_read_length": 148.97,
"minimum_read_length": 35,
"quality_metrics": [],
"read_count": 79510948,
"release_timestamp": "2025-02-11T00:54:57.799312+00:00",
"s3_uri": "s3://igvf-files/2024/11/18/eade5244-61f7-49ac-a491-6972f2b99379/IGVFFI8640VURN.fastq.gz",
"schema_version": "15",
"seqspecs": [],
"sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"sequencing_run": 2,
"status": "released",
"submitted_by": {
"@id": "/users/ec46dfbd-fc11-419d-81e8-8ba82ffe6375/",
"title": "Terence Li"
},
"submitted_file_name": "/home/ec2-user/igvf/submit/fastq/year2/snmct/yzcl51/20231204-C39D9-Pos1-A12_S12_L004_R2_001.fastq.gz",
"submitter_comment": "Changed from Novaseq 6000 to Novaseq X on 20250224",
"summary": "R2 reads from sequencing run 2",
"upload_status": "validated",
"uuid": "eade5244-61f7-49ac-a491-6972f2b99379"
}