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INDEXED
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SequenceFile
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IGVFFI8625PQNA
IGVFFI8625PQNA
released
validated
Json view
File Set
IGVFDS4482RXDU
(Parse SPLiT-seq)
Summary
R2 reads from sequencing run 6
File Format
fastq
Content Type
reads
md5sum
03a11532f44e9d0a1a198e37ae8dedcd
Content MD5sum
41a1633ca62815e8ed645addf510ca2a
File Size
5.4 GB
Submitted File Name
igvf_007/nova2/igvf_007_B16_D_nova_N2_L002_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ali Mortazavi, UCI
(
HG012077
—
Ali Mortazavi
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
6
Flowcell ID
HWHTCDSX5
Lane
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
86
Read Count
157214054
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0200QAXS
MultiplexedSample
epididymis
,
hypothalamus
,
ovary
,
oviduct
,
pituitary gland
,
testis
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 254 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4149ZDOP
tar
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
1.6 GB
validated
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI6149VZIW
yaml
seqspec
seqspec of IGVFFI4302RFFJ, IGVFFI8625PQNA
Ali Mortazavi, UCI
1.4 KB
validated