IGVFFI8596SMES

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8570TBZV(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X027_G2_P026_L002_R2

md5sum

a9efe2cba3dfd9da51ed268e899184ca

Content MD5sum

ee7efba23529f543b6af4ee09d6d0282

File Size

12 GB

Submitted File Name

Multiome_RNA_X027_G2_L002_P026_S11_L002_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

252155235

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1917JWNL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 71 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples