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IGVFFI8569MXAP

released
validated
File Set
IGVFDS4464LQXA(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 172
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_172_R1
bradley-bernstein:SS-LS_2073_R1
buenrostro-bernstein:SS-LS_172_R1
buenrostro-bernstein:SS-LS_2073_R1
md5sum
87e0eace40e68620e3767418c5922f6f
Content MD5sum
bc1b4df91de937a8016fa989db361952
File Size
702 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-202_L1_SS-PKR-131_2022-APRIL-R1-PLATE2-ENTIRE-PLATE_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
172
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
21714608

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)

Files Derived From This File

2 items
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
2.2 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
924 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8569MXAP, IGVFFI0012VGXP
Jason Buenrostro, Broad
1.2 KB
validated