IGVFFI8558MDDE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3392QGFY(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X035_G6_P035_L003_R3

md5sum

1285ae82d993807c16c410470bc372b6

Content MD5sum

1246da062c7ed4f7ff27b612289dc9a8

File Size

12 GB

Submitted File Name

Multiome_ATAC_X035_G6_L006_P035_S38_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

213324295

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5298RMGT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) substantia nigra tissue; Homo sapiens (female, 84 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples