IGVFFI8514JJZK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6242NOGX(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X014_G1_P011_L003_R2

md5sum

df4554a51726ccfb904bc7b81d6e51e6

Content MD5sum

d5c5171af7e22c6627498593446addd0

File Size

4.7 GB

Submitted File Name

Multiome_ATAC_X014_G1_L001_P011_S27_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

271467960

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3402LHVF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) cerebellar cortex tissue; Homo sapiens (male, 80 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples