IGVFFI8506ZTML

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI8506ZTML/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI8506ZTML",
    "assay_titles": [
        "lentiMPRA"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011966/",
        "component": "functional characterization"
    },
    "content_md5sum": "24e76af14f6dcf6b62027b5242a2cd94",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-03-19T14:51:57.534323+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS4302OZMS/",
        "accession": "IGVFDS4302OZMS",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM0720XHJA/",
                "accession": "IGVFSM0720XHJA",
                "classifications": [
                    "pooled cell specimen"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/CL_0011020/",
                        "status": "released",
                        "term_name": "neural progenitor cell"
                    }
                ],
                "status": "released",
                "summary": "neural progenitor pooled cell specimen, Homo sapiens transfected with a reporter library",
                "taxa": "Homo sapiens"
            }
        ],
        "status": "released",
        "summary": "lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder"
    },
    "file_size": 342814228,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI8506ZTML/@@download/IGVFFI8506ZTML.fastq.gz",
    "illumina_read_type": "R3",
    "input_file_for": [
        "/tabular-files/IGVFFI3167QVNF/",
        "/tabular-files/IGVFFI7367TYXG/",
        "/tabular-files/IGVFFI6886KJDH/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/nadav-ahituv/",
        "title": "Nadav Ahituv, UCSF"
    },
    "loci_list_for": [],
    "maximum_read_length": 15,
    "md5sum": "d9c09bf854e7d44ea44f338fa7b29267",
    "mean_read_length": 15,
    "minimum_read_length": 15,
    "read_count": 15744296,
    "read_names": [
        "Barcode reverse"
    ],
    "release_timestamp": "2025-01-09T20:34:27.236716+00:00",
    "s3_uri": "s3://igvf-files/2024/03/19/4dae9a89-bc79-4ccd-94b4-ac77c0ecfd33/IGVFFI8506ZTML.fastq.gz",
    "schema_version": "14",
    "seqspecs": [
        "/configuration-files/IGVFFI3444VJCS/"
    ],
    "sequencing_kit": "NextSeq 500 Mid Output v2 Kit",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0009173/",
        "status": "released",
        "term_name": "Illumina NextSeq 500"
    },
    "sequencing_run": 1,
    "status": "released",
    "submitted_by": {
        "@id": "/users/696ac72c-9846-469d-8bf1-8bd01856d4ba/",
        "title": "Thorben Maass"
    },
    "submitted_file_name": "\"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/ASD_nadav/counts/TSTFI48016273DNA_rep2_R3.fastq.gz\"",
    "summary": "R3 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "4dae9a89-bc79-4ccd-94b4-ac77c0ecfd33"
}