IGVFFI8466ZPHF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7060UGUF(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP028_G4_P075_L005_R2

md5sum

ceee0ce0190354080af69ee86b29ab96

Content MD5sum

0438fde029bece91b4b0ee9bdfe6a42d

File Size

2.5 GB

Submitted File Name

Multiome_ATAC_RP028_G4_L004_P075_S36_L005_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

142351795

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4592JTZF

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples