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INDEXED
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SequenceFile
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IGVFFI8456ZBJR
IGVFFI8456ZBJR
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS6828EMUR
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X036_G6_P038_L002_R2
md5sum
a76f20d7a5bf8eba497abb590ee4264c
Content MD5sum
cf750a09f8ed9ea2a0c94839ff78d7ae
File Size
12 GB
Submitted File Name
Multiome_RNA_X036_G6_L006_P038_S4_L002_R2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
H5VM5DSX7
Lane
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
90
Read Count
243732013
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0887BJSQ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples