IGVFFI8455NPIW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2128ATAI(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X053_G2_P071_L007_I1

md5sum

c2fd6b5fa8a30e9ef954674f04288e21

Content MD5sum

07b38980291e0bdd811f49bd33e73e42

File Size

1.3 GB

Submitted File Name

Multiome_ATAC_X053_G2_L002_P071_S46_L007_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

174130656

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6916RHHD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 73 years) middle temporal gyrus tissue; ... and 8 more samples