IGVFFI8445RCJZ

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI8445RCJZ/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI8445RCJZ",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "content_md5sum": "13abdf8e6aeefaef8c7d6c53493b4593",
19    "content_type": "reads",
20    "controlled_access": false,
21    "creation_timestamp": "2023-10-10T18:17:08.788807+00:00",
22    "externally_hosted": false,
23    "file_format": "fastq",
24    "file_set": {
25        "@id": "/measurement-sets/IGVFDS4248UFKQ/",
26        "@type": [
27            "MeasurementSet",
28            "FileSet",
29            "Item"
30        ],
31        "accession": "IGVFDS4248UFKQ",
32        "assay_term": {
33            "@id": "/assay-terms/OBI_0003109/",
34            "term_name": "single-nucleus RNA sequencing assay"
35        },
36        "data_use_limitation_summaries": [
37            "no certificate"
38        ],
39        "file_set_type": "experimental data",
40        "samples": [
41            {
42                "@id": "/multiplexed-samples/IGVFSM3306TYTX/",
43                "@type": [
44                    "MultiplexedSample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM3306TYTX",
49                "classifications": [
50                    "tissue",
51                    "multiplexed sample"
52                ],
53                "disease_terms": [],
54                "modifications": [],
55                "sample_terms": [
56                    {
57                        "@id": "/sample-terms/UBERON_0000473/",
58                        "status": "released",
59                        "term_name": "testis"
60                    },
61                    {
62                        "@id": "/sample-terms/UBERON_0000992/",
63                        "status": "released",
64                        "term_name": "ovary"
65                    },
66                    {
67                        "@id": "/sample-terms/UBERON_0000993/",
68                        "status": "released",
69                        "term_name": "oviduct"
70                    },
71                    {
72                        "@id": "/sample-terms/UBERON_0001301/",
73                        "status": "released",
74                        "term_name": "epididymis"
75                    },
76                    {
77                        "@id": "/sample-terms/UBERON_0002369/",
78                        "status": "released",
79                        "term_name": "adrenal gland"
80                    }
81                ],
82                "status": "released",
83                "summary": "multiplexed sample: Mus musculus AJ (male, 69 days) epididymis tissue; Mus musculus PWK/PhJ (female, 69 days) oviduct tissue; ... and 190 more samples",
84                "taxa": "Mus musculus",
85                "treatments": []
86            }
87        ],
88        "status": "released",
89        "summary": "Parse SPLiT-seq"
90    },
91    "file_size": 39176209697,
92    "flowcell_id": "AAC2WTJHV",
93    "gene_list_for": [],
94    "href": "/sequence-files/IGVFFI8445RCJZ/@@download/IGVFFI8445RCJZ.fastq.gz",
95    "illumina_read_type": "R1",
96    "input_file_for": [
97        "/matrix-files/IGVFFI0624XIGI/"
98    ],
99    "integrated_in": [],
100    "lab": {
101        "@id": "/labs/ali-mortazavi/",
102        "title": "Ali Mortazavi, UCI"
103    },
104    "loci_list_for": [],
105    "maximum_read_length": 140,
106    "md5sum": "1d7f99d7475bb7ae637960f9dd8a5635",
107    "mean_read_length": 140,
108    "minimum_read_length": 140,
109    "quality_metrics": [],
110    "read_count": 564143439,
111    "read_names": [
112        "Read 1"
113    ],
114    "release_timestamp": "2025-04-19T18:02:44.389130+00:00",
115    "s3_uri": "s3://igvf-files/2023/10/10/fe80a5e5-ebce-4744-831f-c47c282cdc06/IGVFFI8445RCJZ.fastq.gz",
116    "schema_version": "15",
117    "seqspecs": [
118        "/configuration-files/IGVFFI3938JJYZ/"
119    ],
120    "sequencing_kit": "NextSeq 1000/2000 P3 Reagent Kit",
121    "sequencing_platform": {
122        "@id": "/platform-terms/EFO_0010963/",
123        "status": "released",
124        "term_name": "Illumina NextSeq 2000"
125    },
126    "sequencing_run": 5,
127    "status": "released",
128    "submitted_by": {
129        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
130        "title": "Diane Trout"
131    },
132    "submitted_file_name": "igvf_008/nextseq/igvf_008_B04_D_next_N1_R1.fastq.gz",
133    "summary": "R1 reads from sequencing run 5",
134    "upload_status": "validated",
135    "uuid": "fe80a5e5-ebce-4744-831f-c47c282cdc06"
136}