IGVFFI8414DJVM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8237XHKO(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X018_G6_P017_L001_R2

md5sum

553fe3e752efe73af465b790ae6812e7

Content MD5sum

01f299ac7453aa6a6bc4071b84c2c776

File Size

3.0 GB

Submitted File Name

Multiome_ATAC_X018_G6_L006_P017_S8_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7NNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

177417726

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8022FKWE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 73 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples