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IGVFFI8411QKTW

released
validated
File Set
IGVFDS4595RDQM(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp16_rna_10x4_NGS4_r1
md5sum
b9c24800c301a36d6e2b4b52611526bd
Content MD5sum
80d3d0f4ab40834a0f2847b92fd81694
File Size
5.2 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX4_S10_L006_R1_001.fastq.gz
Checkfiles Version
v14
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22NCFCLT3
Lane
6
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
277819633

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
224 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8411QKTW, IGVFFI5943RDQM, IGVFFI0290GYHZ, IGVFFI6088UVTH
Ansuman Satpathy, Stanford
1.4 KB
validated