IGVFFI8373FTKP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9856KSFL(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X011_G8_P009_L001_R1

md5sum

be1bad90121e8f1ba96c6707516a9c43

Content MD5sum

8c58dea727c0c7ff8582cec73c0bd875

File Size

5.3 GB

Submitted File Name

Multiome_ATAC_X011_G8_L008_P009_S10_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

161532990

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5882JKZW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 81 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples