IGVFFI8372JEVG

released
validated
{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI8372JEVG/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI8372JEVG",
    "assay_titles": [
        "Parse SPLiT-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012077/",
        "component": "mapping"
    },
    "content_md5sum": "1c512f77b82d0a01cd414870926c6d26",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-10-17T00:23:05.731811+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS7747QPWM/",
        "@type": [
            "MeasurementSet",
            "FileSet",
            "Item"
        ],
        "accession": "IGVFDS7747QPWM",
        "assay_term": {
            "@id": "/assay-terms/OBI_0003109/",
            "term_name": "single-nucleus RNA sequencing assay"
        },
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM5830NUXR/",
                "@type": [
                    "MultiplexedSample",
                    "Sample",
                    "Item"
                ],
                "accession": "IGVFSM5830NUXR",
                "classifications": [
                    "tissue",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/CL_2000001/",
                        "status": "released",
                        "term_name": "peripheral blood mononuclear cell"
                    },
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "status": "released",
                        "term_name": "left cerebral cortex"
                    },
                    {
                        "@id": "/sample-terms/NTR_0000750/",
                        "status": "released",
                        "term_name": "left hippocampal formation"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0000007/",
                        "status": "released",
                        "term_name": "pituitary gland"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0000473/",
                        "status": "released",
                        "term_name": "testis"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0000948/",
                        "status": "released",
                        "term_name": "heart"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0000992/",
                        "status": "released",
                        "term_name": "ovary"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0000993/",
                        "status": "released",
                        "term_name": "oviduct"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0001301/",
                        "status": "released",
                        "term_name": "epididymis"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0001388/",
                        "status": "released",
                        "term_name": "gastrocnemius"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0001898/",
                        "status": "released",
                        "term_name": "hypothalamus"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0002107/",
                        "status": "released",
                        "term_name": "liver"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0002113/",
                        "status": "released",
                        "term_name": "kidney"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0002369/",
                        "status": "released",
                        "term_name": "adrenal gland"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: Mus musculus B6(SJL)-Trem2<em1Aduci>/J (female, 65 days) hypothalamus tissue; Mus musculus B6(SJL)-Trem2<em1Aduci>/J (male, 69 days) liver tissue; ... and 94 more samples",
                "taxa": "Mus musculus",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "Parse SPLiT-seq"
    },
    "file_size": 15774892231,
    "flowcell_id": "AAC5N2NHV",
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI8372JEVG/@@download/IGVFFI8372JEVG.fastq.gz",
    "illumina_read_type": "R2",
    "input_file_for": [
        "/matrix-files/IGVFFI4422QBCM/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ali-mortazavi/",
        "title": "Ali Mortazavi, UCI"
    },
    "lane": 2,
    "loci_list_for": [],
    "maximum_read_length": 86,
    "md5sum": "db33db424bfe78f320f1ad703d426294",
    "mean_read_length": 86,
    "minimum_read_length": 86,
    "quality_metrics": [],
    "read_count": 327279698,
    "read_names": [
        "Read 2"
    ],
    "release_timestamp": "2025-04-19T02:00:38.091026+00:00",
    "s3_uri": "s3://igvf-files/2024/10/17/9687d069-0981-41fd-9951-e26b918278d6/IGVFFI8372JEVG.fastq.gz",
    "schema_version": "15",
    "seqspecs": [
        "/configuration-files/IGVFFI3614HULC/"
    ],
    "sequencing_kit": "NextSeq 1000/2000 P3 Reagent Kit",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0010963/",
        "status": "released",
        "term_name": "Illumina NextSeq 2000"
    },
    "sequencing_run": 2,
    "status": "released",
    "submitted_by": {
        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
        "title": "Diane Trout"
    },
    "submitted_file_name": "igvf_015/nextseq/015_67F_S2_L002_R2_001.fastq.gz",
    "summary": "R2 reads from sequencing run 2",
    "upload_status": "validated",
    "uuid": "9687d069-0981-41fd-9951-e26b918278d6"
}