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IGVFFI8358EBVB

released
validated
File Set
IGVFDS1331MCPD(Proliferation CRISPR cutting screen integrating a guide (sgRNA) library targeting phenotype-associated variants genome-wide)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
daniel-bauer:ChrX_Screen_no_deaminase_day14_rep2_read1
md5sum
7aa98a12f486fae674f298adb9c13e51
Content MD5sum
ad7de00746120ed9bf42abb164c72e3a
File Size
104 MB
Submitted File Name
/data/pinello/PROJECTS/2024_02_EC_ChrX/submitted_files/ChrX_Screen_1_#GAGT_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Index
GAGT
Average Read Length
150
Read Count
2475823

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HUDEP-2 cell line, Homo sapiens modified with CRISPR cutting SpRY, transduced (lentivirus) with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
csv
guide quantifications
guide quantifications
Daniel Bauer, HSCI
345 KB
validated

Attribution

Award
HG012010
Principal Investigator(s)
Contact P.I.
Luca Pinello
Lab
Daniel Bauer, HSCI