IGVFFI8344ZNWJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0577OKVB(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP026_G1_P075_L004_I1

md5sum

4cf1d8c3911d0538ace5fe5f4a4f0852

Content MD5sum

313ae1f75258f69c7ffc8aa8dca99bfa

File Size

1.3 GB

Submitted File Name

Multiome_ATAC_RP026_G1_L001_P075_S17_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

170856201

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0921NWYJ

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples