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IGVFFI8339VQHE

released
validated
File Set
IGVFDS4158FYXM(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp16_atac_10x1_NGS3_i1
md5sum
eabfb3f182b11dfd8886cf665dd2b374
Content MD5sum
ea72e0dce8de5b0f787eb93aeee93367
File Size
1.5 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/ATAC/CMAS18_ATAC1_S58_L007_I1_001.fastq.gz
Checkfiles Version
v14

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22NC7YLT3
Lane
7
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
8
Read Count
211821988

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
5.1 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI7565MMYU, IGVFFI3438WUNG, IGVFFI0608ZQOT, IGVFFI8339VQHE
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford