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IGVFFI8335OFAN

released
validated
File Set
IGVFDS4279AZHG(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 5
File Format
fastq
Content Type
reads
Aliases
buenrostro-bernstein:surya-DSS17-18-prim-2-RNA.R1.fastq.gz
md5sum
64d3c40245f50af040853bd66a1a03e6
Content MD5sum
3cb3d5cd965a6e0ca9ff1beeed37b130
File Size
9.7 GB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/submit-fqs/DSS17-18-prim-2-RNA.R1.fastq.gz
Checkfiles Version
v14
Submitter Comment
DSS17-18-prim-22k-1_P1.07,DSS17-18-prim-22k-2_P1.08
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
5
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
100
Read Count
174337282

Samples

1 item
Accession
Type
Sample Terms
Summary
PrimaryCell
Mus musculus C57BL/6J colon cell

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
111 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI6843NEUV, IGVFFI8335OFAN, IGVFFI2649RUAJ
Jason Buenrostro, Broad
1.2 KB
validated