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INDEXED
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SequenceFile
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IGVFFI8332QYKO
IGVFFI8332QYKO
released
validated
Json view
File Set
IGVFDS2108XESQ
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R3 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp9_atac_10x2_NGS3_r3
md5sum
ab13772812be64c67d25d22a2cbe8652
Content MD5sum
0169a8656306d4d6da76e6a5025fef50
File Size
12 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230707_IGVF9_McGinnis/ATAC/FASTQ/ATAC_2CMAS_IGVF9_A_S22_L007_R3_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JGVLT3
Lane
7
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R3
Average Read Length
50
Read Count
426074504
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2512OHNK
MultiplexedSample
B cell
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4907GYFZ
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.6 GB
validation exempted
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI5856VSCP
yaml
seqspec
seqspec of IGVFFI8123QWYG, IGVFFI8454EASP, IGVFFI4156JJZJ, IGVFFI8332QYKO
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford