IGVFFI8310ROFJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4166GJEC(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X051_G6_P069_L002_R1

md5sum

e5f1380b261c973ee14b42ea74fc3ae0

Content MD5sum

5983d11104db22e5f3134a98043781a4

File Size

8.2 GB

Submitted File Name

Multiome_ATAC_X051_G6_L006_P069_S14_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

119288656

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6649IRWP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 8 more samples