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IGVFFI8305FKDJ

released
validated
File Set
IGVFDS7135ULJC(mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin0hrs-Rep2_S4_I1
md5sum
e4f16c5cd3dee337a261fa14e416b938
Content MD5sum
ff6df606e142c66e8ae018b9b9a25b77
File Size
117 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L378_S1_L004_I1_001.fastq.gz

Sequencing Details

Sequencing Platform
Illumina NextSeq 550
Sequencing Run
1
Lane
4
Illumina Read Type
I1
Average Read Length
8
Read Count
16629194

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI4471BAWM, IGVFFI8305FKDJ, IGVFFI7281TZZG
Jesse Engreitz, Stanford
1.0 KB
validated

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford