IGVFFI8289ODNH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6716ODJI(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X018_G5_P017_L001_R3

md5sum

ec31255c953f3104f2f8379252cb27e8

Content MD5sum

537312f3a16c873913cc9ed0f050b6f2

File Size

5.2 GB

Submitted File Name

Multiome_ATAC_X018_G5_L005_P017_S7_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7NNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

161047438

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7341PDKY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 73 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples