IGVFFI8286FFXP

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI8286FFXP/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI8286FFXP",
10    "aliases": [
11        "ansuman-satpathy:igvf_exp12_multi_10x6_NGS4_r2"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "content_md5sum": "6749e4d628841307c797673960bdc096",
22    "content_type": "reads",
23    "controlled_access": true,
24    "creation_timestamp": "2024-07-24T01:36:31.736834+00:00",
25    "externally_hosted": false,
26    "file_format": "fastq",
27    "file_set": {
28        "@id": "/auxiliary-sets/IGVFDS5700OHED/",
29        "@type": [
30            "AuxiliarySet",
31            "FileSet",
32            "Item"
33        ],
34        "accession": "IGVFDS5700OHED",
35        "file_set_type": "lipid-conjugated oligo sequencing",
36        "samples": [
37            {
38                "@id": "/multiplexed-samples/IGVFSM5574TAPU/",
39                "@type": [
40                    "MultiplexedSample",
41                    "Sample",
42                    "Item"
43                ],
44                "accession": "IGVFSM5574TAPU",
45                "classifications": [
46                    "differentiated cell specimen",
47                    "tissue",
48                    "multiplexed sample"
49                ],
50                "disease_terms": [],
51                "modifications": [],
52                "sample_terms": [
53                    {
54                        "@id": "/sample-terms/CL_0000236/",
55                        "status": "released",
56                        "term_name": "B cell"
57                    },
58                    {
59                        "@id": "/sample-terms/UBERON_0002371/",
60                        "status": "released",
61                        "term_name": "bone marrow"
62                    }
63                ],
64                "status": "released",
65                "summary": "multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples",
66                "taxa": "Homo sapiens",
67                "treatments": []
68            }
69        ],
70        "status": "released",
71        "summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
72    },
73    "file_size": 865744522,
74    "flowcell_id": "225LWLLT3",
75    "gene_list_for": [],
76    "href": "/sequence-files/IGVFFI8286FFXP/@@download/IGVFFI8286FFXP.fastq.gz",
77    "illumina_read_type": "R2",
78    "input_file_for": [
79        "/tabular-files/IGVFFI4872ZEXY/"
80    ],
81    "integrated_in": [],
82    "lab": {
83        "@id": "/labs/ansuman-satpathy/",
84        "title": "Ansuman Satpathy, Stanford"
85    },
86    "lane": 4,
87    "loci_list_for": [],
88    "maximum_read_length": 90,
89    "md5sum": "508b067e4bef908525391b85b28cd810",
90    "mean_read_length": 90,
91    "minimum_read_length": 90,
92    "quality_metrics": [],
93    "read_count": 18606098,
94    "release_timestamp": "2025-03-22T00:39:38.401341+00:00",
95    "s3_uri": "s3://igvf-restricted-files/2024/07/24/18650d7e-2836-48d4-ad6e-1ea3aae8f436/IGVFFI8286FFXP.fastq.gz",
96    "schema_version": "15",
97    "seqspecs": [
98        "/configuration-files/IGVFFI7371ZWTJ/"
99    ],
100    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
101    "sequencing_platform": {
102        "@id": "/platform-terms/EFO_0022840/",
103        "status": "released",
104        "term_name": "Illumina NovaSeq X"
105    },
106    "sequencing_run": 1,
107    "status": "released",
108    "submitted_by": {
109        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
110        "title": "Christopher Mcginnis"
111    },
112    "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/MULTI/FASTQ/MULTI6_S13_L004_R2_001.fastq.gz",
113    "summary": "R2 reads from sequencing run 1",
114    "upload_status": "validated",
115    "uuid": "18650d7e-2836-48d4-ad6e-1ea3aae8f436"
116}