IGVFFI8265IDNX

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2954XAKI(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X052_G3_P069_L003_R1

md5sum

db30904928e3e4f01fdc2fecdd940518

Content MD5sum

d7a02f7c0490d675eb741081bfc38b0a

File Size

11 GB

Submitted File Name

Multiome_ATAC_X052_G3_L003_P069_S19_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

163010240

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6674PZBO

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease; ... and 8 more samples