IGVFFI8264TVIE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2128ATAI(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X053_G2_P071_L006_I1

md5sum

c2a3774ab2d15c93d709a23b6190d231

Content MD5sum

d560d13ad6e25a71762d324cb2e3a074

File Size

1.3 GB

Submitted File Name

Multiome_ATAC_X053_G2_L002_P071_S46_L006_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

173580600

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6916RHHD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 73 years) middle temporal gyrus tissue; ... and 8 more samples