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INDEXED
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SequenceFile
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IGVFFI8223CXYQ
IGVFFI8223CXYQ
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4074ZYTU
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X051_G1_P070_L005_R1
md5sum
f40d58b539d5f877abb408571b2bdfa0
Content MD5sum
c1698b14a462578fc85a56696aed9564
File Size
10 GB
Submitted File Name
Multiome_RNA_X051_G1_L001_P070_S29_L005_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
19RTCA4LE
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
151
Read Count
116472164
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2530JHLD
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 8 more samples