IGVFFI8211KHIX

released

validated

File Set

IGVFDS0051MRCH(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_CCND1_Auxin6hrs-FF1-BinB-PCR4-Rep1_S290

md5sum

8d932962269a4f087986399db822dd54

Content MD5sum

8b24b3eac5cae08f1d6e22f12f770bfe

File Size

23 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220308B014_CCND1_SSFA2_FAM3C/fastq_trim/CCND1-Auxin6hrs-FF1-BinB-PCR4-Rep1_S290_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

TCTGCAAG:GCCA

Average Read Length

Read Count

1063668

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM5255ABUW

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of CCND1) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library