IGVFFI8192NBBF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1448UYDZ(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X005_G7_P003_L004_R3

md5sum

b3872f58136e2a6b87376d0714cf8182

Content MD5sum

9fd29fee66aab3dc304856eea286c1d9

File Size

5.3 GB

Submitted File Name

Multiome_ATAC_X005_G7_L007_P003_S25_L004_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5TH7DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

162772613

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5849MWXQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 87 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples