IGVFFI8190XIQW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6097MLNW(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X012_G1_P009_L001_R3

md5sum

d35735a0930829216a670b5dc375f5a8

Content MD5sum

875d14dd99e526b62bdb444fd328b5e9

File Size

11 GB

Submitted File Name

Multiome_ATAC_X012_G1_L001_P009_S11_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

355676169

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7268MVFI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) putamen tissue; Homo sapiens (male, 72 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples