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IGVFFI8179RWIF

released
validated
File Set
IGVFDS0534ALXE(quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder)
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
md5sum
71c6b23d39e45f0128d9deab8e221c21
Content MD5sum
ff2bc8077ff87c42b3fad8a7f6aae5ee
File Size
641 MB
Submitted File Name
"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/ASD_nadav/counts/TSTFI35083510DNA_rep3_R2.fastq.gz"

Sequencing Details

Sequencing Platform
Illumina NextSeq 500
Sequencing Run
1
Sequencing Kit
NextSeq 500 Mid Output v2 Kit
Illumina Read Type
R2
Average Read Length
10
Read Count
34374251

Files Derived From This File

3 items
tsv
reporter experiment
reporter experiment
Nadav Ahituv, UCSF
553 KB
validated
tsv
reporter genomic variant effects
reporter genomic variant effects
Nadav Ahituv, UCSF
121 KB
validated
tsv
reporter experiment
reporter experiment
Nadav Ahituv, UCSF
543 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI3029BTOF, IGVFFI8179RWIF, IGVFFI3151ROZD
Nadav Ahituv, UCSF
1.3 KB
validated

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Nadav Ahituv, UCSF