IGVFFI8166DIWR

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI8166DIWR/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI8166DIWR",
10    "aliases": [
11        "ansuman-satpathy:igvf_exp6_rna_10x4_NGS1_i2"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "content_md5sum": "e7a2ad54b628ee833c45e340d8688127",
22    "content_type": "reads",
23    "controlled_access": false,
24    "creation_timestamp": "2024-07-22T16:51:06.891235+00:00",
25    "externally_hosted": false,
26    "file_format": "fastq",
27    "file_set": {
28        "@id": "/measurement-sets/IGVFDS6424PGVE/",
29        "@type": [
30            "MeasurementSet",
31            "FileSet",
32            "Item"
33        ],
34        "accession": "IGVFDS6424PGVE",
35        "assay_term": {
36            "@id": "/assay-terms/OBI_0003109/",
37            "term_name": "single-nucleus RNA sequencing assay"
38        },
39        "controlled_access": false,
40        "data_use_limitation_summaries": [
41            "No limitations"
42        ],
43        "file_set_type": "experimental data",
44        "samples": [
45            {
46                "@id": "/multiplexed-samples/IGVFSM2522EBPE/",
47                "@type": [
48                    "MultiplexedSample",
49                    "Sample",
50                    "Item"
51                ],
52                "accession": "IGVFSM2522EBPE",
53                "classifications": [
54                    "cell line",
55                    "differentiated cell specimen",
56                    "multiplexed sample"
57                ],
58                "disease_terms": [],
59                "modifications": [],
60                "sample_terms": [
61                    {
62                        "@id": "/sample-terms/EFO_0003042/",
63                        "status": "released",
64                        "term_name": "H1-hESC"
65                    }
66                ],
67                "status": "released",
68                "summary": "multiplexed sample: Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days; Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days; ... and 6 more samples",
69                "taxa": "Homo sapiens",
70                "treatments": []
71            }
72        ],
73        "status": "released",
74        "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
75    },
76    "file_size": 1227872067,
77    "flowcell_id": "223JHMLT3",
78    "gene_list_for": [],
79    "href": "/sequence-files/IGVFFI8166DIWR/@@download/IGVFFI8166DIWR.fastq.gz",
80    "illumina_read_type": "I2",
81    "input_file_for": [
82        "/matrix-files/IGVFFI9795MDBY/"
83    ],
84    "integrated_in": [],
85    "lab": {
86        "@id": "/labs/ansuman-satpathy/",
87        "title": "Ansuman Satpathy, Stanford"
88    },
89    "lane": 1,
90    "loci_list_for": [],
91    "maximum_read_length": 10,
92    "md5sum": "59bb672086e8e44a8f58169c5e7a83dc",
93    "mean_read_length": 10,
94    "minimum_read_length": 10,
95    "quality_metrics": [],
96    "read_count": 241684478,
97    "release_timestamp": "2025-03-07T01:13:18.499574+00:00",
98    "s3_uri": "s3://igvf-files/2024/07/22/b18cb623-13a9-4a5e-a8a4-4a65ffd9fb1c/IGVFFI8166DIWR.fastq.gz",
99    "schema_version": "15",
100    "seqspecs": [
101        "/configuration-files/IGVFFI2738OPTN/"
102    ],
103    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
104    "sequencing_platform": {
105        "@id": "/platform-terms/EFO_0022840/",
106        "status": "released",
107        "term_name": "Illumina NovaSeq X"
108    },
109    "sequencing_run": 1,
110    "status": "released",
111    "submitted_by": {
112        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
113        "title": "Christopher Mcginnis"
114    },
115    "submitted_file_name": "/oak/stanford/projects/igvf/Projects/230522_IGVF6_McGinnis/GEX/FASTQ/GEX_4_S4_L001_I2_001.fastq.gz",
116    "summary": "I2 reads from sequencing run 1",
117    "upload_status": "validated",
118    "uuid": "b18cb623-13a9-4a5e-a8a4-4a65ffd9fb1c"
119}